July 13th, 2009 @ 8:00PM ET |
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| Rd | Pick | Team | Selection |
| 1 | 1 | SC | Justin Smoak (1B - Tex) |
| 1 | 2 | SC (from GLD) | Brian Matusz (P - Bal) |
| 1 | 3 | WEY (from RAK) | Mike Stanton (OF - Fla) |
| 1 | 4 | TIJ (from PEO) | Buster Posey (C - SF) |
| 1 | 5 | BRW | Tim Alderson (P - SF) |
| 1 | 6 | QC (from WEY) | Jesus Montero (C - NYY) |
| 1 | 7 | ARL | Carlos Santana (C - Cle) |
| 1 | 8 | WEY (from TIJ) | Freddie Freeman (1B - Atl) |
| 1 | 9 | PEO (from TKO) | Jeremy Hellickson (P - TB) |
| 1 | 10 | WS | |
| 1 | 11 | TIJ (from QC) | Logan Morrison (1B - Fla) |
| 1 | 12 | WEY (from LV) | Mat Latos (P - SD) |
| 2 | 1 | BRW | Yonder Alonso (1B - Cin) |
| 2 | 2 | WS | |
| 2 | 3 | WEY | Dayana Viciedo (3B - CWS) |
| 2 | 4 | QC (from RAK) | Kyle Drabek (P - Phi) |
| 2 | 5 | QC (from ARL) | Jenrry Megia (P - NYM) |
| 2 | 6 | SC (from PEO) | Casey Kelly (P - Bos) |
| 2 | 7 | ARL (from TKO) | Jake Arrieta (P - Bal) |
| 2 | 8 | ARL (from QC) | Jhoulys Chacin (P - Col) |
| 2 | 9 | WEY (from LV) | Dominic Brown (OF - Phi) |
| 2 | 10 | SC | Aaron Hicks (OF - Min) |
| 2 | 11 | ARL (from GLD) | Derek Norris (C - Was) |
| 2 | 12 | PEO (from TIJ) | Greg Halman (OF - Sea) |
| C | 1 | WP | Pedro Alvarez (3B - Pit) |
| C | 2 | WP | Tim Beckham (SS - TB) |